Here, I highlight a few open source projects that I have created or contributed. The current list is not complete and there are projects that are not public from my collaborations with industry.
Initial conception & development
- scgen: Generative modeling of single-cell perturbation response
- scarches: Reference based analysis of single-cell genomics
- CPA: Modeling high-throughput single-cell screening datasets
- trVAE: Distribution matching for single-cell data