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Here, I highlight a few open source projects that I have created or contributed. The current list is not complete and there are projects that are not public from my collaborations with industry.

Initial conception & development

  • scgen: Generative modeling of single-cell perturbation response Alt text Alt textAlt text
  • scarches: Reference based analysis of single-cell genomics Alt text Alt textAlt text
  • CPA: Modeling high-throughput single-cell screening datasets Alt text
  • trVAE: Distribution matching for single-cell data Alt text

Supervision of lead developer

  • mvTCR: Multimodal integration of T-cell receptor and single-cell data Alt text
  • multigrate: Multi-omic data integration for single-cell genomics Alt textAlt text